Tag Archives: Crerar Kiosk

Issues of ‘Medicine on the Midway’ available on UChicago Campus Publications

Medicine on the Midway, Vol. 1, No. 1, December 1944 (previously titled Bulletin of the Medical Alumni Association, University of Chicago)

Issues of Medicine on the Midway from 1944 to 1981 have been digitized and are now available on The University of Chicago Campus Publications website. Formerly titled Bulletin of the Medical Alumni Association, this periodical was published by the School of Medicine at the University of Chicago.

University of Chicago Campus Publications is a digital collection of publications documenting the history of the University of Chicago and the work of its faculty, students, and alumni; read more about its launch.

New issues of Medicine on the Midway are available at UChicago Medicine.

New developments for Knowledge@UChicago, the University’s institutional repository

The University of Chicago Library is enhancing Knowledge@UChicagothe University’s institutional repository for faculty and student research, in order to better meet growing needs and interests around data sharing and preservation, open access, and reproducible research results. In mid-December, visitors to Knowledge@UChicago will encounter a new, user-friendly interface for sharing and accessing research. Improved capabilities for data and software preservation will follow over the winter quarter.

Launched in 2016, Knowledge@UChicago is an open access repository for sharing and preserving scholarly work created by faculty, students, and staff. It currently serves as a home for UChicago faculty and students’ digital research publications such as articles, book chapters, conference materials, and a small number of datasets, and for dissertations and theses by students who choose to make them open to the public. UChicago faculty and students in divisions and departments that range from the Physical Sciences Division to the School of Social Service Administration to the Humanities Division have already contributed publications and datasets to Knowledge@UChicago.

With the support of capital funding, the Library is migrating the repository to the TIND digital platform. TIND is based on the open source software Invenio, originally developed at CERN, the European Organization for Nuclear Research, to manage its own digital outputs.

This new system will offer more features for handling research data in addition to traditional research publications, and will provide greater flexibility for future customization and integration with researchers’ workflows. The first phase of the project will migrate existing content to the new system by the end of December 2018. The second phase, beginning in January, will add new features that better support research data and software preservation, including richer metadata for data deposits and integration with GitHub.

This move will improve the infrastructure available to our University community to make their data available for reuse, new discoveries, and replication. It will also support researchers as they meet requirements for data sharing from funders and publishers, The new developments to the institutional repository are accompanied by additional library data services, including assistance with data acquisition and transformation, data analysis, and data management. We encourage UChicago faculty, students, and staff to contact the Library at knowledge@lib.uchicago.edu to discuss your data management and sharing requirements and to begin depositing scholarly works. Librarians are available for consultations and instructional sessions on the repository for departments and groups on campus.

Knowledge@UChicago is managed and supported by the Library, in collaboration with IT Services at the University of Chicago.

Riccardo Levi-Setti, physicist and paleontologist

Levi Setti

Levi-Setti with some of his trilobites: https://bit.ly/2DRi4sK

Riccardo Levi-Setti, emeritus professor, died earlier this month.  He began his career as a physicist but also went on to research and publish in paleontology.  Born into a Jewish family in Italy, he survived the Holocaust in hiding.  He earned a PhD in physics in 1947 and started his career at the University of Chicago in 1956 as a researcher in particle physics.  He later developed an interest in the extinct sea creatures trilobites and published multiple books on the subject.

 

 

 

 

His books in physics include:

Elementary Particles, Chicago: University of Chicago Press [1965]. Crerar: QC721.L561

Strongly Interacting Particles, Chicago: University of Chicago Press [1973].  Mansueto: QC793.3.H5L6

 

Some of his books in paleontology:

Trilobites: a Photographic Atlas, Chicago: University of Chicago Press [1975]. Crerar: QE821.L65

Trilobites, Chicago: University of Chicago Press c1993.  Crerar: QE821.L460 1993.

More of his books in the Library: https://catalog.lib.uchicago.edu/vufind/Search/Results?type=AuthorBrowse&lookfor=%22Levi-Setti,%20Riccardo%22

His papers are also held in the Library’s Archival Collections: http://pi.lib.uchicago.edu/1001/cat/bib/8448151

University of Chicago News obituary

Setti-Levi in the university’s Cyclotron pit. https://bit.ly/2SbRjlV

New guide to papers of physicist Lalitha Chandrasekhar

The Lalitha Chandrasekhar Papers are now open for research. Lalitha Chandrasekhar (1910-2013) was married to Nobel Prize-winning astrophysicist and longtime University of Chicago professor Subrahmanyan Chandrasekhar. She was born in Madras, India and spent much of her childhood there. The Chandrasekhars moved to Williams Bay, Wisconsin in late 1936 when Subrahmanyan accepted a position at the University of Chicago’s Yerkes Observatory. They remained there until 1964, when they moved to Chicago. The Lalitha Chandrasekhar Papers document her life in Williams Bay and Chicago and her travels, mostly in India, the United States, and Europe.

Lalitha Chandrasekhar, in glasses. Photograph is unlabeled, but she is likely with her sisters Shantha, Kanthamani, and Radha. Chandrasekhar, Lalitha. Papers, Box 184, scrapbook, Special Collections Research Center, University of Chicago Library.

A letter acknowledging Lalitha Chandrasekhar’s contributions to the Democratic Party of Wisconsin. She was an active supporter of progressive causes for her entire life. Chandrasekhar, Lalitha. Papers, Box 45, Folder 2, Special Collections Research Center, University of Chicago Library.

The first page of the Chandrasekhar’s guest book, which was signed by visitors to their home from 1938 until Chandra’s death in 1995. It includes signatures from many notable twentieth century scientists. Chandrasekhar, Lalitha. Papers, Box 206, Special Collections Research Center, University of Chicago Library.

Expanding services for faculty in a changing environment

Brenda L. Johnson

Brenda L. Johnson, Library Director and University Librarian (Photo by John Zich)

Today’s scholarly environment presents an increasing array of challenges and opportunities for faculty and graduate students. New funding agency requirements call on researchers to present advance plans for openly sharing and preserving their data.  Researchers are seeking ways to obtain data in new formats, to visualize information in new ways, and to rescue and share data for new purposes.  Across disciplines, researchers are constantly challenged to find and adopt new tools and techniques. The Library is meeting this challenge by launching new initiatives, developing cutting-edge skills among our librarians, and bringing on new staff members who can assist researchers in this changing scholarly environment.

Stacie Williams

Stacie Williams, Center for Digital Scholarship Director

The Library’s new Center for Digital Scholarship (CDS) will be an umbrella for many of these services, facilitating the analysis of complex data, the visualization of theoretical relationships, the preservation of core research, and the sharing of research results. Stacie Williams, who joined the Library in August as the inaugural CDS Director, brings experience working with researchers in her previous position managing the Freedman Center for Digital Scholarship at Case Western Reserve University. Williams is working with subject librarians and faculty to identify priorities for establishing new spaces, technical infrastructure, and services that meet research and teaching needs.  Following are some of the key areas in which initiatives are already underway.

Data preservation and sharing

Nora Mattern

Nora Mattern, Scholarly Communications Librarian

The Library is expanding Knowledge@UChicago, the University’s digital institutional research repository, to better support the needs of data preservation. Led by new Scholarly Communications Librarian Nora Mattern, the Library is migrating Knowledge@UChicago to a new platform that was initially developed at CERN to support high energy physics. The new Knowledge@UChicago will launch in January and will provide funder-compliant solutions for researchers to share and preserve their code, data, and research results.  Mattern also provides consultations on good data management practices, writing data management plans, and copyright.

The Library is also partnering with the Energy Policy Institute at Chicago (EPIC) to host a Council on Library and Information Resources Postdoctoral Fellow in Energy Economics Data Curation, Ana Trisovic. Trisovic is focusing on the particular challenges EPIC faculty face in collecting and preserving energy data, which is often available only from private industry or difficult-to-use government websites. She will be building a clearinghouse for EPIC’s data to facilitate discovery and reuse, as well as developing solutions for preserving and sharing the code that researchers use to analyze their data. Trisovic will use the skills she gained earning a PhD in Computer Science and her experience developing similar preservation solutions at CERN, applying them to the field of energy economics.

Data acquisition and use

Kristin Martin

Kristin Martin, Director of Technical Services

The challenge of acquiring data for research is shared by many disciplines. For example, the Library subscribes to thousands of electronic books and journals, but researchers interested in data mining these texts cannot easily do so using the vendor’s PDFs, which are intended for individual reading. Kristin Martin, the Library’s Director of Technical Services, excels at working with publishers to provide alternative access that is optimized for data mining.  The Library’s subject specialists can work with faculty across the disciplines and with Martin to seek such alternative access.

Elizabeth Foster

Elizabeth Foster, Social Sciences Data Librarian

Elizabeth Foster, the Library’s new Social Sciences Data Librarian, can take this one step further, not only helping researchers find and acquire relevant data, but also helping them transform that data, for example, by formatting it to match the requirements of a particular tool.  Foster will offer workshops and will be developing data analysis consultation services, with a focus on using R and Stata.

Geospatial analysis

Cecilia Smith

Cecilia Smith, GIS and Maps Librarian

Faculty in many disciplines are exploring the ways spatial and temporal analysis and visualization can be used to gain new insights into their data. Cecilia Smith, the Library’s new GIS and Maps Librarian, can consult on the use of GIS information and geospatial tools to analyze and visualize trends in data from mapping the shifts in the border of the Roman Empire over time, to plotting the incidence of traffic accidents in relation to red light cameras, to mapping the impact of environmental factors on health outcomes, and more.  Read “Opening a GIS Hub at Crerar Library” for more information.

At-risk data and data rescue

Sarah G. Wenzel

Sarah G. Wenzel, Bibliographer for the Literatures of Europe and the Americas

Researchers interested in documenting historical trends are often stymied when early data are in analog formats not conducive to data analysis.  Heritage data–such as weather data and astronomical observations–are often the only evidence remaining of ephemeral or disappearing phenomena.  The Library is currently partnering with the Humanities Division to ensure that the UChicago Digital Media Archive’s linguistic and ethnomusicology recordings made by former faculty are converted from fragile magnetic tape to a digital form that can be used by researchers today. We are also working with the Ivy Plus Libraries on a web archiving project. Sarah G. Wenzel, Bibliographer for the Literatures of Europe and the Americas, co-developed a proposal with a colleague at Columbia University to create a digital archive of comics and artists’ websites.  Currently, more than 150 websites are being actively archived by this project and can be found at archive-it.org/collections/10181.

The expert and talented staff members of the Library are committed to expanding services that meet faculty needs in this changing environment. We look forward to working with you and encourage you to visit our Center for Digital Scholarship web page and to contact your subject specialist, Stacie Williams, or Elisabeth Long, Associate University Librarian for Information Technology and Digital Scholarship, to discuss your research needs.

Scientific reproducibility, data management, and inspiration

“Science moves forward by corroboration–when researchers verify others’ results,” the journal Nature states in its July special edition on Challenges in Irreproducible Research.  “There is a growing alarm about results that cannot be reproduced. . . . Journals, scientists, institutions and funders all have a part in tackling reproducibility.”

Stefano Allesina discusses a data management plan with Elisabeth Long, who points sto the plan on screen.

Librarian Elisabeth Long (left) discusses a data management plan with Professor Stefano Allesina. (Photo by Joel Wintermantle)

Science faculty across the disciplines are increasingly taking up the challenge to publish their research in ways that are more easily reproduced, and librarians are collaborating with these researchers to ensure that rigorously collected data, metadata, and algorithms are preserved and made accessible to the research community.

“Many of these efforts revolve around teaching, planning, and practicing excellent data management throughout the research life cycle, from grant writing to publication,” said Elisabeth Long, Associate University Librarian for Information Technology and Digital Scholarship.  “The University of Chicago Library is offering a growing set of data management research and teaching services that help UChicago scientists win grants and produce and publish reproducible results that will shape the future of their fields.”

Teaching good data management from the beginning

The UChicago Biological Sciences Division recently played a leading part in improving graduate education in its discipline by developing a National Science Foundation-funded course called Responsible, Rigorous, and Reproducible Conduct of Research: R3CR.  All UChicago first-year BSD graduate students are required to take the course, learning how to use current methods in computational biology in an ethical and reproducible way.  Elisabeth Long has partnered with the course’s creators, Professors Victoria Prince, Stefano Allesina, and Stephanie Palmer, to provide a class session that introduces students to the principles of data management in the lab setting.

“Biology produces a lot of data, and we have seen the kind of mistakes that people can make that are terrifying,” Professor Allesina said. “Elisabeth talked a lot about how you make sure that you’re keeping your data safe throughout your thesis research: how you should name your files, where you should save your files, how you make sure they are saved for posterity, and where there are institutional repositories or online repositories where you can publish your data.”

The Library is partnering with researchers across campus to develop practices and tools that can facilitate the kind of recordkeeping and data curation that is currently demanded of scientists.  Librarians are offering workshops and training sessions that prepare University of Chicago students to graduate with exceptional data management and preservation skills.

Electronic lab notebooks and data management plans

This Autumn Quarter, the Library’s new Center for Digital Scholarship begins offering drop-in consultation hours and customized one-on-one sessions to work with faculty on their data management plans, choosing between the University’s Knowledge@UChicago research repository and disciplinary archives for preserving and sharing research outputs.

The Center will also offer advice on selecting and using research management tools such as electronic lab notebooks and the Open Science Framework.  Research management tools provide platforms where faculty can centralize all their research activities, enabling easy file management, version control, protocol sharing, analysis activities, email, and other interactions between members of a lab. “One challenge confronting researchers is choosing from among the many existing systems,” Long said. “The Center for Digital Scholarship’s consultation services can pair librarians with individual faculty members, or bring sessions to your labs to explore the best solution for your particular research scenario.”

When the data don’t stand alone

Complex research workflows that present particular challenges for reproducibility often occur in fields where data are processed multiple times before final analysis. “In such cases, preserving the data alone is insufficient to support reproducibility,” Long explained. “The computational code for processing the data must also be preserved along with its relation to the data at various stages of processing.”

Marco Govoni, a researcher at the Institute of Molecular Engineering and Argonne National Laboratory, has been developing a tool for mapping and documenting these relationships.  Qresp: Curation and Exploration of Reproducible Scientific Papers (at qresp.org) guides the researchers through the process of documenting the relationship between the datasets, scripts, tools, and notebooks that were used in the creation of a scientific paper. Librarians are working with Govoni to explore ways in which the Library could support his work and potentially integrate it with the Library’s new institutional repository platform.

Data and inspiration

In consulting with librarians, faculty sometimes discover unexpected sources of data, inspiring new research projects.  When Long was talking to the R3CR class about data management and how they will submit their dissertations to ProQuest, a national dissertation repository, Professor Allesina began to consider the value its metadata could provide for the study of careers in science.  “There’s a lot of interest in trying to see if we can improve the situation in the sciences by increasing representations, for example, of women or minorities,” Allesina explained, “but one thing that we lack is some sort of longitudinal analysis, because once PhD students are out the door, it’s very difficult to find them again.”

Librarian Nora Mattern, Professor Stefano Allesina, and a sketch of a computational pipeline. (Photo by Joel Wintermantle)

At Allesina’s request, Long put him in touch with the Library’s Director of Technical Services, Kristin Martin, who worked with ProQuest to obtain the name, institution, and year of graduation for dissertation authors from the U.S. and Canada from 1993 to 2015.  He is now planning to combine that metadata with publication data from Scopus to track the length and locations of scientists’ careers in academia.

Such a study raises specific reproducibility challenges.  In working on a grant proposal to the National Science Foundation to support this research, Allesina turned to Nora Mattern, Scholarly Communications Librarian, and Debra Werner, Director of Library Research in Medical Education, for advice on how to integrate proprietary data owned by ProQuest and Scopus into the data management plan.  “How much can you share with other scientists?” Allesina asked.  “Can you share some summary statistics of the data?  Can you share de-identified data? If you imagine that someone wants to repeat my analysis of PhD students, will they have sufficient data?” Mattern and Werner helped him to structure the data management plan and to consider the legal implications.

When Allesina came to the United States from Italy, he was surprised at the role he found librarians taking in the digital age.  “Here librarians are thinking forward,” he said.  “Nowadays we have this mass of information. How do we navigate that? How do we organize it? How do we make it searchable? I am always amazed that people can be so helpful. I was dreaming of this data about PhDs, and I talked to Elisabeth, and she said ‘let me look into that.’ After a few weeks, I got gigabytes of data.”

His advice to colleagues: “Run it by a librarian before giving up.”

To consult with a librarian on data management and scientific reproducibility, talk to your Library subject specialist or email data-help@lib.uchicago.edu.

 

Opening a GIS Hub at Crerar Library

Location is important. Tracking the movement of contagious disease helps contain its spread. Demographic geography influences access to financial and retail services. Virtualized medieval cities provide opportunities to explore the contexts of historical events. Each of these phenomena can be studied with GIS.

GIS and Maps Librarian and students with map of Chicago on monitor

GIS and Maps Librarian Cecilia Smith (center) discusses mapping tools and resources with (from left) students Paul Gilbert, II, College ’20, and Emil Sohlberg, College ’20. (Photo by Joel Wintermantle)

Geographic information systems, or GIS, is used to analyze locational information across disciplines such as public health, environmental science, sociology, economics, policy, history, and many more. Faculty and students are increasingly integrating GIS into their research, and opportunities to learn the technology are growing at the University of Chicago.

Thanks to a generous gift from the Kathleen and Howard Zar Science Library Fund and support from the Library Council, the University of Chicago Library is developing a GIS Hub at the John Crerar Library to enable geospatial research and learning activities on campus. The Hub will be located in Crerar’s Kathleen A. Zar Room, named in honor of the late director of the science libraries. Brenda Johnson, Library Director and University Librarian, sees the new Hub as critical to supporting research on campus. “The GIS Hub at the Library will provide faculty, students and staff from every discipline at UChicago with access to important technology and resources and, very importantly, the ability to consult with a GIS Librarian with expert knowledge,” she said.

Eight workstations in the Hub will offer GIS software, including QGIS, GeoDa, and ArcGIS. Large, high-resolution monitors will allow detailed visualization work. The GIS Hub will facilitate individual and collaborative work. Instructional technology will also provide a venue for geospatial workshops and demonstrations.

As the new GIS and Maps Librarian, I will support faculty and students through consultations on gathering and exploring geospatial data, spatial literacy, and visualizing geographic information.  I will also offer workshops on working with GIS data and getting started with the software. At Chicago, I will build on my recent experience as a Clinical Assistant Professor and the Geospatial Librarian at Texas A&M University Libraries, where I collaborated on research projects with faculty from geography, sociology, anthropology, history, urban planning, and ecosystem science. The Early Modern Shipwreck project at modernshipwrecks.com is a good example of one of my collaborations with faculty where I provided geospatial expertise.

The GIS Hub opens to the campus community in Fall 2018, located with the new Media Arts, Data, and Design Center on the first floor of the newly renovated Crerar Library. The Media Arts, Data and Design Center will open in early Winter Quarter.  This co-location is an exciting opportunity for faculty and students to access technological and maker resources for interdisciplinary research and learning.

For questions regarding GIS resources at the Library, please contact me at ceciliasmith@uchicago.edu.

Featured Library technologist: Emma Boettcher

Emma Boettcher is the University of Chicago Library’s User Experience Resident Librarian. She has a Master of Science in Information Science from University of North Carolina-Chapel Hill and joined the Library in 2016 as part of a residency program that brings top recent graduates to Chicago.  Denizens of Regenstein may recognize Boettcher as the librarian who frequently conducts user testing in the lobby. Elisabeth Long talked with Boettcher about how her work enables faculty and students’ research in a changing environment.

Q: Tell us about a project you’ve worked on that has affected a website or tool that faculty and students are using today.  What was your role?  How did you contribute to the final product?

Emma Boettcher

Emma Boettcher (Photo by John Zich)

A: This past spring we launched a new streamlined process for requesting a book through Interlibrary Loan. We knew that this new service would address many of the frustrations our patrons experienced when requesting books through our legacy Interlibrary Loan services, but we also knew that it would represent a major change in patrons’ workflow.  My role was to do testing that would inform the design of the service so that these changes would be easy for patrons to understand. This included everything from labeling to page organization to visual cues that guide the patron toward the best option.

Our designer put together a set of prototype options, and I developed several research scenarios that linked the prototypes with live data so that I could watch testers try to accomplish some common tasks and see where they ran into problems, took circuitous routes, or performed actions that we weren’t expecting. The findings were used by the development team to make the service easier to navigate.

Q: What is one of your favorite projects, and what did you like about it?

A: I am currently working on a wayfinding project to study the maps and signage in Regenstein.  We are concentrating not just on how a patron finds a book in the Library Catalog but also on how they then go about finding the book itself, whether it lives in the bookstacks, a reading room, or in a reference collection.  What I like about this study is that it shows that user experience testing is not just about online experiences. It covers the much wider context of all the things people might be doing in our library.

Q: What are you working on now? 

A: Although a lot of my work focuses on faculty and students’ experiences of our library services, librarians themselves are also major users of our library systems. I am currently involved in a national and international open source project to develop a next generation library management system.  I use my user experience skills to study how different librarians across the project want the system to function.  It is fascinating to see where librarians from UChicago, Duke, and Germany, among others, have different ideas about workflows they need to support and where their needs converge.  I work with librarians from across the partnership to define specific interactions, such as what actions need to happen when a book is checked out to a patron, and then my job is to act as the translator between them and the developers who are building this open source system.

This interview is the first in a series on Library technologists.  Watch the Library News site for more such interviews.

“Library Adventures in a Digital Age,” a history of medicine pop-up display

Library Adventures in a Digital Age

Join Dr. Mindy Schwartz, Professor of Medicine and Associate Program Director for Internal Medicine at the University of Chicago, in the Special Collections Research Center for a special pop-up display of rare medical history collections.

Library Adventures in a Digital Age:
Chicago Connections
Friday, October 26, 1:00 – 4:30 p.m.
Special Collections Research Center
Regenstein Library, 1st floor

View a selection of books and objects from our collections that enhance our understanding of the history of science and medicine, and learn how they can be used for research and teaching. A resource guide will be available.

For more information about the event, contact the Special Collections Research Center.

Apply for the Library Student Advisory Group

Mansueto and Regenstein

Mansueto and Regenstein libraries (photo by Tom Rossiter)

The Library Student Advisory Group serves as a formal channel of communication between students and the Library administration. The group discusses matters related to all six campus libraries, including collections, spaces, and services, along with issues relating to the present and future needs of the student community.

The Library Student Advisory Group meets once a quarter and representatives serve for two-year terms with an option to renew.

We are looking for student representatives from the following schools and divisions:

  • College (Class of 2022)
  • Biological Sciences Division
  • Booth School of Business
  • Harris School of Public Policy Studies
  • Physical Sciences Division
  • Pritzker School of Medicine
  • Social Sciences Division
  • School of Social Service Administration.

Please complete our online application by October 26, 2018.

For more information about the Library Student Advisory Group, or the application process, please contact:

Rebecca Starkey
Librarian for College Instruction & Outreach
773-702-4484
rstarkey@uchicago.edu