Science News & Announcements

Top 100 articles of 2016 according to Altmetric

Altmetric has released its list of the top 100 articles of 2016, and the #1 article was written by a former UChicago faculty member (and soon-to-be former POTUS): Altmetric donut

Obama B. United States Health Care Reform: Progress to Date and Next Steps. JAMA. 2016;316(5):525-532. doi:10.1001/jama.2016.9797

The list is based on each article’s Attention Score, which is calculated by the conversations about the article that occur in places like news outlets, blogs, Twitter, Facebook and more.  The article above had a score of 8063; it is the number inside an Altmetric “donut” pictured here.

Read more about various research metrics on the Research Impact guide: http://guides.lib.uchicago.edu/researchimpact

New Human Genome Resources site now available

The new Human Genome Resources site offers access to visualization and analysis tools available for the human genome, as well as other relevant tools like BLAST, the NCBI remapping service and databases that provide human molecular data. The resources are sorted into categories like Find, View, Download and Learn, making it easier to find what you need.

With the new site, you can:

In addition, the portal includes an extensive listing of learning resources that may help you have a better understanding of the wealth of information associated with the human genome.

Publishers require ORCID iDs for submitting authors

ORCID logoWiley, the Royal Society of Chemistry, and the Publications Division of the American Chemical Society (ACS) have each signed ORCID’s Open Letter and announced their new requirement of an ORCID iD for all submitting authors as part of the manuscript submission process.

An ORCID id (Open Researcher and Contributor iD), is a persistent, unique, numeric identifier for individual researchers and creators. It distinguishes individual researchers with the same (or very similar) name and supports automated linkages between a researcher and their research activities. A researcher’s ORCID record, which includes their ORCiD identifier, holds non-sensitive information such as name, organization, and research activities.

Learn more about ORCID and how to create your
own ORCID iD at http://guides.lib.uchicago.edu/ORCID

Extended Library hours Dec. 2–4

Mansueto Library at sunsetTo support students preparing for finals, Crerar, Mansueto and Regenstein will extend weekend building hours during reading period and finals week.

Mansueto will be open Friday, December 2 and Saturday, December 3 until 11:45 p.m. Crerar and Regenstein will be open these days until midnight.

The Regenstein 1st floor all-night study space will be open 24 hours from Monday, November 28 until the end of finals on Friday, December 9.

For a full list of library hours, see http://hours.lib.uchicago.edu.

NLM Webinar Series: “Insider’s Guide to Accessing NLM Data: EDirect for PubMed”

Beginning November 30, 2016, the National Library of Medicine (NLM) will present the three-part Webinar series “Insider’s Guide to Accessing NLM Data: EDirect for PubMed”.

This series of workshops will introduce new users to the basics of using EDirect to access exactly the PubMed data you need, in the format you need. Over the course of three 90-minute sessions, students will learn how to use EDirect commands in a Unix environment to access PubMed, design custom output formats, create basic data pipelines to get data quickly and efficiently, and develop simple strategies for solving real-world PubMed data-gathering challenges. No prior Unix knowledge is required; novice users are welcome!

This series of classes involves hands-on demonstrations and exercises, and we encourage students to follow along. Before registering for these classes, we strongly recommend that you:

  • Watch the first Insider’s Guide class “Welcome to E-utilities for PubMed,” or be familiar with the basic concepts of APIs and E-utilities
  • Be familiar with structured XML data (basic syntax, elements, attributes, etc.)
  • Have access to a Unix command-line environment on your computer. For more information, see our Installing EDirect page.
  • Install the EDirect software. For more information, see our EDirect installation page.

Due to the nature of this class, registration will be limited to 50 students per offering.

Registration is currently open for the November/December 2016 series:

  • Part 1: Getting PubMed Data: Wednesday, November 30, 1:00 – 2:30 PM EST
  • Part 2: Extracting Data from XML: Wednesday, December 7, 1:00 – 2:30 PM EST
  • Part 3: Building Practical Solutions: Wednesday, December 14, 1:00 – 2:30 PM EST

Students are expected to attend Part 1, Part 2, and Part 3 in a single series.

To register, and for more information, visit: https://dataguide.nlm.nih.gov/classes.html#edirect-for-pubmed

All About EndNote (Desktop Version) Monday, Nov 21, 12-1 PM

When: Monday, November 21, 2016 12:001:00 p.m.
Where: Crerar Library, Computer Classroom
5730 South Ellis Avenue, Chicago, IL
Description: EndNote is a reference manager used to manage citations, PDFs, and create formatted bibliographies as you write your paper. In this workshop, learn how to use the desktop version of EndNote. Topics covered include: creating and managing citation libraries, importing citations from online databases and other sources, importing and managing PDFs and creating bibliographies. Registration is required.
Register: http://rooms.lib.uchicago.edu/event/2959806
Contact: John Crerar Library
773-702-7715
Tag: Graduate Students, Workshops, Training, Staff
Notes: Persons with disabilities who need an accommodation in order to participate in this event should contact the event sponsor for assistance. For events on the Student Events Calendar, please contact ORCSA at (773) 702-8787.
Information on Assistive Listening Device

Webinar: PubMed for Clinicians

PubMed logoOn November 9th, NCBI staff will show health care professionals how to search PubMed for the most relevant and recent literature, explore specific clinical research areas, set up email alerts, and more.

Date and time: Wednesday, November 9, 2016 12:00 PM – 1:00 PM CST

Registration URL: http://bit.ly/2feyobc

After registering for the webinar, you will receive a confirmation email with information about attending the webinar. After the live presentation, the webinar will be uploaded to the NCBI YouTube channel. Any related materials will be accessible on the Webinars and Courses page; you can also learn about future webinars on this page.

Advancing digital scholarship

Researchers across the University of Chicago and their collaborators around the world are engaging in a rapidly expanding range of digital research and teaching projects.  The Library has already worked with faculty members on digital projects ranging from the management of archeological information from the site of ancient Ashkelon to the search for and discovery of the Higgs boson. We would like to invite additional faculty members to think of us as partners in digital scholarship and to contact us to discuss how we can collaborate to identify, obtain, disseminate, and preserve digital data.

Brenda L. Johnson, Library Director and University Librarian (Photo by John Zich)

Brenda L. Johnson, Library Director and University Librarian (Photo by John Zich)

Earlier this year, we released Library Strategic Directions, 2016-2019: Inquiry, Innovation, and Impact [PDF].  In it, we defined five directions that will guide the library’s efforts as we continue critical commitments and assume new roles that are vital to research, innovation, and learning at UChicago.  One of those directions focuses on advancing digital scholarship.  The Library is committed to increasing the scholarly impact of the University by building robust services and technology infrastructures to support emerging modes of research, innovation, and scholarship.

What does that mean for faculty and students at the University of Chicago?

A hub for digital scholarship

The Library will be a hub for digital scholarship by providing faculty and students with tools and services that strengthen the impact and visibility of their research and creative endeavors.

Today’s researchers and funders are increasingly interested in transparency, accessibility, and the reproducibility of data sources.  The Library can help you to save and publicly share data in ways that meet these growing demands.  Our new digital repository service for the campus community, Knowledge@UChicago (knowledge.uchicago.edu), is our first major step in that direction.  Built in partnership with IT Services and the Research Computing Center, Knowledge@UChicago can now accept finished research products and small data sets for archiving and sharing. We are currently developing Knowledge@UChicago into a more robust system and are eager to hear from researchers to ensure that we develop functionality that meets your needs.  I encourage you to read more about Knowledge@UChicago and to contact Amy Buckland (knowledge@lib.uchicago.edu) to discuss ways that this digital repository can serve you now and in the future.

Services for the life cycle of research data

The Library will develop an array of services to support the life cycle of research data from assistance with writing a data plan to managing, sharing, and preserving data.

ATLAS cavern at CERN Large Hadron Collider

View of the ATLAS cavern taken during technical stop. ATLAS is one of two general-purpose detectors at the CERN Large Hadron Collider (LHC). Librarians from UChicago and Notre Dame are collaborating with physicists to explore key issues that must be solved to preserve LHC data, software, and algorithms. (CERN-EX-1209198-02, courtesy of CERN).

The end of a digital project is not the only time librarians can assist you.  The Library is supporting faculty needs for research data management services through programs that include workshops on granting agency requirements and best practices for describing and managing research data.

The Library can be a particularly good partner for faculty involved in cross-disciplinary and inter-institutional projects. Librarians are skilled in determining how to make data interoperable, so that the data you have collected for one purpose can be reused by other researchers asking different questions or can be aggregated with colleagues’ data to reveal a larger picture.  The Library can also work with inter-institutional projects to determine sustainable long-term solutions for sharing and preserving their publications and data, engaging library partners as appropriate.

We are already working in this area.  For example, as part of the Data and Software for Open Science project, librarians from UChicago and Notre Dame are collaborating with physicists from around the world who are working with data produced by the Large Hadron Collider at CERN. Together, we are exploring the key issues that must be solved to provide preservation solutions not just for the high energy physics data, but also the software and algorithms associated with that data.

Elisabeth Long and colleagues (digitalscholarship@lib.uchicago.edu) can consult with you as you begin to write a data management plan or at various stages of your research as you consider sustainable data management practices, inter-operability, and long-term access and preservation.

Advancing open scholarship

The Library will take a leadership role in advancing open scholarship at the University by supporting and promoting open access, open data, open educational resources, and other forms of openness in the scholarly and research environment.

In addition to developing Knowledge@UChicago to support sharing of UChicago research, the Library has long supported open scholarship by digitizing items in our collections and making them freely available online.  The recently completed Goodspeed Manuscript project is one of many examples.  We also collaborate with libraries around the world on open access projects such as the South Asia Materials Project’s Open Archives Initiative.

If you are interested in making your research or course materials openly available, starting an open access journal, or working with the Library to make resources openly available, please contact Amy Buckland (open@lib.uchicago.edu).

Looking to the future

In the coming years, the Library seeks to make its digital scholarship services increasingly robust, ensuring students and faculty have access to spaces, technologies, and consultation services that support their exploration of new methodologies, analysis of complex data, and sharing of their research and creative endeavors through new publishing models.

There are many ways we can pursue this goal.  I look forward to learning more about how we can collaborate with you on digital scholarship.

 

Embedded librarians support faculty, students where they work

Many faculty and students know that they can get help from librarians through online Ask a Librarian services, or inside Crerar, D’Angelo, Eckhart, Mansueto, Regenstein, and SSA libraries.  Increasingly, librarians are also providing customized on-site research and teaching services. From hospitals to classrooms, and legal clinics to a business incubator, University of Chicago librarians are using their expertise to support faculty, students, residents, and entrepreneurs where they work.

Librarians at the Hospital

Biomedical librarian with faculty physicians and medical student

Biomedical librarian Debra Werner (second from right) provides research support to faculty physicians, including (from left) Dr. Lolita Alkureishi, Dr. Nicola Orlov, and (right) medical student Riley Brian. (Photo by Joel Wintermantle)

Librarian Debra Werner joins the internal medicine team at UChicago Medicine’s Bernard Mitchell Hospital for patient rounds once a week, to provide research support as faculty, residents, and medical students develop a treatment plan for patients. Her iPad at the ready, she obtains rapid answers to patient-related clinical questions ranging from the side effects of pharmaceuticals to the evidence for selecting one treatment option over another for a specific patient.

Dr. Vineet Arora, Associate Professor and Assistant Dean for Scholarship and Discovery, as well as a member of the Board of the Library, is one of the attending physicians who brings Werner on rounds.   “I think that a librarian helps to promote greater awareness of the importance of clinical questions and evidence in patient care,” she explained. “It also helps us to understand when there is no data—and you realize that some of medicine is informed by your intuition or gestalt and not by evidence.”

Werner, who is Librarian for Science Instruction & Outreach and Biomedical Reference Librarian, is working with medical student Riley Brian and Dr. Lolita Alkureishi on a research project to assess the impact of having a biomedical reference librarian on the internal medicine and pediatrics inpatient clinical teams. They describe Werner as “a great addition to the team” and have found her research support invaluable. One study by Grefsheim et al. “showed that 97% of physicians who worked with clinical librarians would recommend working with them to other physicians,” they quoted. “Having a clinical librarian on rounds once or twice a week provides a bedside resource for complicated cases, can make patients feel like they are getting the most up to date and informed care, and can help team members learn how to approach answering difficult clinical questions.”

Biomedical Librarian Ricardo Andrade, who, like Werner, is based at the John Crerar Library, also goes weekly to the medical center.  At the request of Dr. Keith Ruskin and Dr. Jeffrey Apfelbaum, he provides on-site office hours for Anesthesiology physicians in the Center for Care and Discovery physician lunchroom, answering questions and raising awareness of research services he can provide.  “Being there, putting a face and a name to the Library, they can see me as their librarian,” Andrade explained.  Topics he has discussed with physicians run the gamut from how they can gain access to specific titles to the future of libraries.

Andrade and Werner both take advantage of their locations on-site to make UChicago faculty and residents aware of the support they can provide to those conducting systematic literature reviews for medical journals.  As medical librarians, they can bring their research expertise to bear by working with physicians as they develop a focused question, by constructing and documenting relevant, replicable searches across multiple medical databases, and by provide citations in the style required by chosen journals.

Librarians in the Classroom

Librarians and bibliographers have long supported a wide range of classes at the University by providing one-time training sessions to students in connection with research assignments. In recent years, they have been expanding the range and depth of their support for classroom teaching by developing tailored instruction with interested faculty.

For example, Nancy Spiegel, Rebecca Starkey, and Julia Gardner have worked closely with Professors Kathleen Belew and Susan Burns from the History Department to develop assignments and teach students information literacy and more advanced research skills as part of the course Doing History, which introduces first- and second-year students to how historians do their work.

Starkey and Spiegel began by teaching research fundamentals, such as how to use subject headings in the Library Catalog, find articles, and use databases to find primary sources.  As the course progressed, they provided support for assignments that required students to use scholarly articles, evaluate historical publications, analyze the contemporary reception of events, and study world history.  In the Special Collections Research Center, Gardner, who is SCRC Head of Reader Services, led multiple sessions that allowed students to interact with early manuscript material, learn about rare book printing, and gain experience using archival collections. With the help of librarians in a wide range of specialties, students’ final assignment was to develop an “archive” of historical materials exploring topics ranging from the relationship between bodegas and immigration patterns in Brooklyn to the role of historians in the making feature films.

Starkey, Librarian for College Instruction and Outreach, and Spiegel, Bibliographer for Art and Cinema and Bibliographer for History, expressed great satisfaction with the growth they have seen in students’ research skills over the quarter.  Students reported in course evaluations that they ended the class feeling increased confidence in their ability to use the library and their pride in their growth as budding historians.  “Then we see them over and over again doing work for other classes” Spiegel said.  “They’re really engaged with the library.  They ask good questions. They don’t just stop with Google or Google Scholar, and they’re a lot more independent.”

Starkey encourages faculty to contact librarians to discuss the many ways they can support coursework—not only through assignments and classroom instruction, but also via online help guides and tutorials.  “We can work with you to develop students’ skills over time based on the specific needs of your course,” she said.

Librarians support faculty who are teaching courses in disciplines across the University and at the graduate and professional as well as the undergraduate level.  For example, Emily Treptow, Business and Economics Librarian for Instruction and Outreach, recently supported faculty in the development and teaching of two new courses: Trustee Thomas Cole’s seminar for the College on Leading Complex Organizations, and Professor Stephen Fisher’s Chicago Booth School of Business course Marketing and Managing Luxury.

Librarians in a Business Incubator and Legal Clinics

Librarian Emily Treptow (left) shows business resources to entrepreneur Andrew Kim, President of HaulHound.com, at the Polsky Innovation Exchange. (Photo by Joel Wintermantle)

Librarian Emily Treptow (left) shows business resources to entrepreneur Andrew Kim, President of HaulHound.com, at the Polsky Innovation Exchange. (Photo by Joel Wintermantle)

This summer, Business and Economics librarians Jeffry Archer, Greg Fleming, and Emily Treptow began working with colleagues at UChicago’s Polsky Center for Entrepreneurship and Innovation, which helps scholars and entrepreneurs translate their ideas and new technologies into start-up businesses and products. Archer, Fleming, and Treptow go to the Polsky Exchange office on 53rd Street monthly to advise UChicago faculty, students, and staff, as well as community members, on how to access the market, industry, and product research they need to develop their business plans.

On the other side of the Midway, D’Angelo Law Library staff provide support for a wide range of legal clinics that give law students hands-on experience addressing real-world legal issues.  The Law School’s Kirkland & Ellis Corporate Lab, for example, gives students the opportunity to develop practical legal and business skills through classroom instruction and work on cutting-edge projects with multinational corporations.

At the beginning of the year, D’Angelo provides a presentation on legal research process for all of the Corporate Lab students.  Then, D’Angelo librarians are assigned as liaisons to each project team, familiarize themselves with the teams’ projects, and meet with the teams at the beginning of the quarter to provide research assistance.  The liaison librarians function as resources for the project teams as they work throughout the year.

“The D’Angelo law librarians (most of whom are former practicing attorneys) are key to the success of our clinical program,” explains David Zarfes, Clinical Professor of Law and Director of the Corporate Lab Programs. “Certainly, they teach our students the skills necessary to research, analyze, and evaluate the accuracy, strength, and appropriateness of sources.   But their value extends beyond this. Fundamentally, the D’Angelo law librarians teach effective and innovative problem solving and communication skills that help our students navigate the path from law school to law practice.”

D’Angelo librarians also work closely with other clinics, including the Young Center for Immigrant Children’s Rights, the International Human Rights Clinic, the Abrams Environmental Law Clinic, and the Institute for Justice Clinic on Entrepreneurship.  Increasing the level of support D’Angelo offers to all legal clinics is an ongoing goal for D’Angelo reference staff.

UChicago faculty in all disciplines are encouraged to speak with librarians about their particular research and teaching objectives to learn how a librarian may be able to support them in their work.

American Chemical Society on Campus

ACS on Campus is coming to the University of Chicago on Monday, November 7 for an exciting afternoon of programming. You’ll enjoy a free lunch and learn about the scholarly publishing process and how to advance your career in the sciences.

Location: Crerar Library, Kathleen Zar Room

Featured Presenters:
Dr. Jonathan Sweedler, Editor-in-Chief, Analytical Chemistry
Dr. Stuart Rowan, Deputy Editor, ACS Macro Letters, Professor at the Institute for Molecular Engineering
Dr. Michael Jewett, Associate Editor, ACS Synthetic Biology
Agenda:
12:00 – 1:00 pm Registration and Lunch
1:00 – 1:15 pm Opening Remarks
1:15 – 2:30 pm Top Ten Tips for Preparing Your Manuscript
2:30 – 3:15 pm Peer Review: How, Why, and What Not to Do
3:15 – 4:30 pm Careers in Chemistry – Panel Discussion
4:30 pm Closing Remarks

The event is free and open to all students and researchers studying the sciences. Lunch and networking is included. Register now!